miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|58328106|gb|AJ764441.1|AJ764441 GAAACCCACCAAGAATGACACATTGGCCAACCGGTTTCCAGGGTTCGGCACCACCATGAATATCCTTTATGGTGAACGCG
TGTGCGGTCAAGGTGACGTGGATGACATGAACACAATTGTCACTCATTATTTATATTATCTTGACTTGATGGGTGTGGGC
CGTGAGGAAGCTGGGCCCCACGAGGTGCTGACGTGTGCAGAACAAAAACCGCTCAATCCGTCGGCTCCGACCCAAGCGTC
TTCAAGGTAAGCGTGTTTGTTTATCGTTCTTGATTCTCTCCATGAATAAATGGTGGTTGCGTGGAAATATGTAAGTTTGT
GGAATCGTCTGTTAATAGATTTGAAATTTGATTCGTTGTTAAAGCGTGTTGTATTTAGTTTGTGAATTTTGCGATATCGA
AGTTATATATGAGTATATATTGTTTGAAGTGCGAAAAAAAAAAAAAAAAAA




Most similar to sp|Q9MA41|CTL1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9MA41|CTL1_ARATH Chitinase-like protein 1 OS=Arabidopsis
           thaliana GN=CTL1 PE=1 SV=1
          Length = 321

 Score =  124 bits (312), Expect = 2e-28
 Identities = 54/81 (66%), Positives = 67/81 (82%)
 Frame = +2

Query: 2   KPTKNDTLANRFPGFGTTMNILYGERVCGQGDVDDMNTIVTHYLYYLDLMGVGREEAGPH 181
           KPTKNDTL+ R P FG+TMN+LYGE  CGQG +D MN I++HYLY+LDLMG+GRE+AGP+
Sbjct: 240 KPTKNDTLSKRGPTFGSTMNVLYGEYTCGQGSIDPMNNIISHYLYFLDLMGIGREDAGPN 299

Query: 182 EVLTCAEQKPLNPSAPTQASS 244
           + L+CAEQKP NPS    +SS
Sbjct: 300 DELSCAEQKPFNPSTVPSSSS 320